Skip Navigation

Ivan Ivanov

Clinical Associate Professor

Curriculum Vitae

Send Email

Phone: (979) 739-4328

Mailstop: 4466

Department: VTPP

Photo of Ivanov, Ivan

Education

  • Ph.D. Mathematics, University of South Florida 1999
  • M.S. Mathematics, Sofia University, Bulgaria 1987

Scholarly Interests

Computational predictive modeling of complex systems, e.g. gene regulatory networks, for the purposes of intervention and control. Omics-data processing and integration. Genomic Signal Processing. Bioinformatics.

Publications

Modeling genetic regulatory networks: continuous or discrete?
Ivanov, Ivan, Dougherty, Edward R
Journal of Biological Systems. 14: 219-229.
Boolean models of genomic regulatory networks: reduction mappings, inference, and external control
Ivanov, Ivan
Current genomics. 10: 375-387.
Linear discrete operators on the disk algebra
Ivanov, Ivan, Shekhtman, Boris
Proceedings of the American Mathematical Society. 129: 1987-1993.
MCMC implementation of the optimal Bayesian classifier for non-Gaussian models: model-based RNA-Seq classification
Knight, Jason M, Ivanov, Ivan, Dougherty, Edward R
BMC bioinformatics. 15: 401.
Genome-wide analysis of the rat colon reveals proximal-distal differences in histone modifications and proto-oncogene expression
Triff, Karen, Konganti, Kranti, Gaddis, Sally, Zhou, Beiyan, Ivanov, Ivan, Chapkin, Robert S
Physiological genomics. 45: 1229-1243.
A framework for grouping nanoparticles based on their measurable characteristics
Sayes, Christie M, Smith, P Alex, Ivanov, Ivan V
International journal of nanomedicine. 8: 45.
Pathway regulatory analysis in the context of Bayesian networks using the coefficient of determination
Zhao, Chen, Ivanov, Ivan, Bittner, Michael L, Dougherty, Edward R
Journal of Biological Systems. 19: 651-682.
Identifying mechanistic similarities in drug responses
Zhao, Chen, Hua, Jianping, Bittner, Michael L, Ivanov, Ivan, Dougherty, Edward R
Bioinformatics. 28: 1902-1910.
Modeling the next generation sequencing sample processing pipeline for the purposes of classification
Ghaffari, Noushin, Yousefi, Mohammadmahdi R, Johnson, Charles D, Ivanov, Ivan, Dougherty, Edward R
BMC bioinformatics. 14: 1.
A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response
Schwartz, S., Friedberg, I., I.V., Ivanov, Davidson, L.A., Goldsby, J.S., Dahl, D.B., Herman, D., Wang, M., Donovan, S.M., Chapkin, R.S.
Genome Biology. 13.
The PSA(-/lo) prostate cancer cell population harbors self-renewing long-term tumor-propagating cells that resist castration
Qin, J., Liu, X., Laffin, B., Chen, X., Choy, G., Jeter, C.R., Calhoun-Davis, T., Li, H., Palapattu, G.S., Pang, S.
Cell Stem Cell. 10: 556-569.
Feature selection for high-dimensional integrated data
Zheng, C., Schwartz, S., Chapkin, R.S., Carroll, R.J., Ivanov, I.
2012 SIAM International Conference on Data Mining (SDM 2012).
State reduction for network intervention in probabilistic Boolean networks
Qian, Xiaoning, Ghaffari, Noushin, Ivanov, Ivan, Dougherty, Edward R
Bioinformatics. 26: 3098-3104.
Selection policy-induced reduction mappings for Boolean networks
Ivanov, Ivan, Simeonov, Plamen, Ghaffari, Noushin, Qian, Xiaoning, Dougherty, Edward R
IEEE Transactions on Signal Processing. 58: 4871-4882.
Reduction mappings between probabilistic Boolean networks
Ivanov, Ivan, Dougherty, Edward R
EURASIP Journal on Applied Signal Processing. 2004: 125-131.
Generating Boolean networks with a prescribed attractor structure
Pal, Ranadip, Ivanov, Ivan, Datta, Aniruddha, Bittner, Michael L, Dougherty, Edward R
Bioinformatics. 21: 4021-4025.
Dynamics preserving size reduction mappings for probabilistic Boolean networks
Ivanov, Ivan, Pal, Ranadip, Dougherty, Edward R
IEEE Transactions on Signal Processing. 55: 2310-2322.
Inference of Boolean Networks under Constraint on Bidirectional Gene Relationships
Vahedi, G, Ivanov, I, Dougherty, E.R.
IET Systems Biology Journal. 3: 191-202.


Request Update