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Bobwhite Quail Genome Project

Bobwhite

Primary Files

GallusENSEMBL_OnNB1.1.sam - Download ZIP (15.67 KB)

RawatDeNovo_cDNAsOnNB1.1.sam - Download ZIP (4.05 KB)

Supplemental Data

Table S1 NB1.0 Contig Map Positions in NB1.1 Download XLSX (9.18 MB)
Table S2 NB1.0 Comparative Genome Alignment to Chicken (S2a) and Zebra Finch (S2b) Download XLSX (72.97 MB)
Table S3 NB1.1 Comparative Genome Alignment to Chicken (S3a) and Zebra Finch (S3b) Download XLSX (40.46 MB)
Table S4 Summary of all Repeat Masker Analyses Download ZIP (16.24 MB)
Table S5 Summary of All PHOBOS Repeat Analyses Download ZIP (51.59 MB)
Table S6 Summary of Putative Nuclear Annotation Models via GlimmerHMM and Blastx with Manual Annotation of the Mitochondria and a Synopsis of MHC Annotations Download XLSX (11.69 MB)
Table S7 Galgal4.71 cDNA Refseq Mappings onto NB1.1 Download XLSX (0.54 MB)
Table S8 Galgal 4.71 ab initio (GENSCAN) Transcript Mappings to NB1.1 Download XLSX (0.79 MB)
Table S9 Bobwhite de novo cDNA Contigs-Blastx to all Avian Proteins Download XLSX (5.70 MB)
Table S10 Bobwhite cDNA Contig Map Positions in NB1.1 Download XLSX (0.59 MB)
Table S11 Bobwhite de novo Outlier Contigs (NB1.0) from Genome-Wide Analyses of Divergence with the Chicken and Zebra Finch Genomes Download DOCX (0.07 MB)
Table S12 NB1.0 QC Analysis on Conserved Outliers Using Additional (Appended) Non-overlapping Blastn data (Chicken S12a, Zebra Finch S12b) To Recalculate the Composite Variable Download XLSX (0.13 MB)
Table S13 NB1.0 Simple de novo Assembly Stats Download XLSX (47.39 MB)
Table S14 NB1.1 Scaffolded de novo Summary Stats Download XLSX (26.36 MB)